PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00035.1.p
Common NameLOC105962350, MIMGU_mgv1a020914mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 349aa    MW: 38852.9 Da    PI: 6.8931
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.8e-34160218159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers+edp++v++tYeg+H+h+
  Migut.N00035.1.p 160 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERSSEDPSIVVTTYEGTHTHP 218
                       59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-34145220IPR003657WRKY domain
SuperFamilySSF1182901.83E-29152220IPR003657WRKY domain
PROSITE profilePS5081131.95155220IPR003657WRKY domain
SMARTSM007745.3E-40160219IPR003657WRKY domain
PfamPF031061.6E-27161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEKIIERKN TAFSDHHHQK MITPAENSLL FDMSSCDDML DFIRTPCSIF DDLLQTITAP  60
SNPPLAALPL CSPAFTLPPE YSEVVNTPVT PNSSSISSSS TEPAAANDID QKMITEITVE  120
EQVEEEQEKT KKQLKPKKKN QKKQKEARFA FMTKSEIDNL DDGYRWRKYG QKAVKNSPFP  180
RSYYRCTSTA CGVKKRVERS SEDPSIVVTT YEGTHTHPCP IMTRGTFSIM PETPLFSSAG  240
RGGGGGFGGS ITHNYAIQQM FHHQQLTPPP HSSLQQQRQP YFHNLTPPPP LMSLISPNNI  300
SSSCSNPTFL PPVFQERPFC PSAASLARDH GLLQDMLPSQ MFNGPKDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-281532201077Probable WRKY transcription factor 4
2lex_A7e-281532201077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842104.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ41e-52WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A022S0R90.0A0A022S0R9_ERYGU; Uncharacterized protein
STRINGVIT_05s0077g00730.t014e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-46WRKY DNA-binding protein 48